Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lp_3590Hypothetical protein, DUF1694 family. (136 aa)    
Predicted Functional Partners:
lp_1572
Hypothetical protein.
 
    0.635
lp_0875
Hypothetical protein.
  
     0.562
lp_3591
Hypothetical membrane protein.
       0.545
lp_3461
ATPase, MoxR family.
  
     0.529
lp_0279
Hypothetical protein.
  
    0.521
rhaD
Rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde.
       0.499
lp_2157
Hypothetical protein; Belongs to the UPF0356 family.
  
     0.446
lp_3460
Hypothetical protein, DUF2201 family,metallopeptidase-related.
  
     0.436
rhaA
L-rhamnose isomerase; Belongs to the rhamnose isomerase family.
       0.422
lp_2224
Dithiol-disulfide isomerase, DsbA family,FrnE-like subfamily.
  
     0.421
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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