Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
lp_2733 | lp_3602 | lp_2733 | lp_3602 | NADPH-dependent FMN reductase family protein. | Hypothetical protein. | 0.430 |
lp_3602 | lp_2733 | lp_3602 | lp_2733 | Hypothetical protein. | NADPH-dependent FMN reductase family protein. | 0.430 |
lp_3602 | lp_3603 | lp_3602 | lp_3603 | Hypothetical protein. | Sugar-phosphate aldolase. | 0.918 |
lp_3602 | pts36A | lp_3602 | lp_3599 | Hypothetical protein. | PTS system, galactitol-specific EIIA component. | 0.848 |
lp_3602 | pts36B | lp_3602 | lp_3600 | Hypothetical protein. | PTS system, galactitol-specific EIIB component. | 0.877 |
lp_3602 | pts36C | lp_3602 | lp_3601 | Hypothetical protein. | PTS system, galactitol-specific EIIC component. | 0.918 |
lp_3603 | lp_3602 | lp_3603 | lp_3602 | Sugar-phosphate aldolase. | Hypothetical protein. | 0.918 |
lp_3603 | pts36A | lp_3603 | lp_3599 | Sugar-phosphate aldolase. | PTS system, galactitol-specific EIIA component. | 0.970 |
lp_3603 | pts36B | lp_3603 | lp_3600 | Sugar-phosphate aldolase. | PTS system, galactitol-specific EIIB component. | 0.976 |
lp_3603 | pts36C | lp_3603 | lp_3601 | Sugar-phosphate aldolase. | PTS system, galactitol-specific EIIC component. | 0.982 |
pts36A | lp_3602 | lp_3599 | lp_3602 | PTS system, galactitol-specific EIIA component. | Hypothetical protein. | 0.848 |
pts36A | lp_3603 | lp_3599 | lp_3603 | PTS system, galactitol-specific EIIA component. | Sugar-phosphate aldolase. | 0.970 |
pts36A | pts36B | lp_3599 | lp_3600 | PTS system, galactitol-specific EIIA component. | PTS system, galactitol-specific EIIB component. | 0.998 |
pts36A | pts36C | lp_3599 | lp_3601 | PTS system, galactitol-specific EIIA component. | PTS system, galactitol-specific EIIC component. | 0.997 |
pts36B | lp_3602 | lp_3600 | lp_3602 | PTS system, galactitol-specific EIIB component. | Hypothetical protein. | 0.877 |
pts36B | lp_3603 | lp_3600 | lp_3603 | PTS system, galactitol-specific EIIB component. | Sugar-phosphate aldolase. | 0.976 |
pts36B | pts36A | lp_3600 | lp_3599 | PTS system, galactitol-specific EIIB component. | PTS system, galactitol-specific EIIA component. | 0.998 |
pts36B | pts36C | lp_3600 | lp_3601 | PTS system, galactitol-specific EIIB component. | PTS system, galactitol-specific EIIC component. | 0.998 |
pts36C | lp_3602 | lp_3601 | lp_3602 | PTS system, galactitol-specific EIIC component. | Hypothetical protein. | 0.918 |
pts36C | lp_3603 | lp_3601 | lp_3603 | PTS system, galactitol-specific EIIC component. | Sugar-phosphate aldolase. | 0.982 |
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