STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_3633Transcription regulator, GntR family. (354 aa)    
Predicted Functional Partners:
lp_3634
Alpha-1,2-mannosidase.
 
    0.935
lp_3631
Alpha-mannosidase (promiscuous).
 
    0.863
lp_3632
Glycosyl hydrolase, DUF336 family.
 
    0.776
lp_0172
Transcription regulator, LacI family,maltose-related.
  
    0.763
lp_0173
Transcription regulator, LacI family, maltose related.
  
    0.756
ccpA
Catabolite control protein A.
  
     0.755
lp_3221
Transcription regulator, LacI family,sucrose-related.
  
     0.750
lp_3642
ABC transporter, substrate binding protein,mannose-related oligosaccharides.
 
  
 0.746
yesM
Two-component system histidine protein kinase; sensor protein.
  
    0.731
ccpB
Catabolite control protein B / transcription regulator, LacI family.
  
     0.702
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.