STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_3642ABC transporter, substrate binding protein,mannose-related oligosaccharides. (490 aa)    
Predicted Functional Partners:
lp_3643
ABC transporter, permease protein,mannose-related oligosaccharides.
 
 0.998
lp_3644
ABC transporter, permease protein,mannose-related oligosaccharides.
 
 0.998
yesM
Two-component system histidine protein kinase; sensor protein.
 
  
 0.884
yesN
Two-component system response regulator.
 
    0.862
gcnA
Beta hexosamidase or lacto-N-biosidase or beta N-acetylglucosamidase.
 
  
 0.857
ugpE
Glycerol-3-phosphate ABC transporter, permease protein.
  
 
 0.803
lp_3631
Alpha-mannosidase (promiscuous).
 
    0.801
lp_3649
Transcription regulator, GntR family.
 
  
 0.797
lp_3650
Regulator, Fis family.
 
     0.791
lp_3634
Alpha-1,2-mannosidase.
 
  
 0.789
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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