STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_3644ABC transporter, permease protein,mannose-related oligosaccharides. (320 aa)    
Predicted Functional Partners:
lp_3643
ABC transporter, permease protein,mannose-related oligosaccharides.
 
 0.999
lp_3642
ABC transporter, substrate binding protein,mannose-related oligosaccharides.
 
 0.998
mdxG
Maltodextrin ABC transporter, permease protein.
 
 
 0.942
msmX
Maltodextrin ABC transporter, ATP-binding protein.
 
 
 0.918
ugpE
Glycerol-3-phosphate ABC transporter, permease protein.
 
 
 0.897
mdxE
Maltodextrin ABC transporter, substrate binding protein.
 
 
 0.874
gcnA
Beta hexosamidase or lacto-N-biosidase or beta N-acetylglucosamidase.
 
    0.856
ugpC
Glycerol-3-phosphate ABC transporter,ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.848
yesM
Two-component system histidine protein kinase; sensor protein.
 
  
 0.838
yesN
Two-component system response regulator.
 
    0.829
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.