STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_3646Transcription regulator, AraC family. (275 aa)    
Predicted Functional Partners:
gcnA
Beta hexosamidase or lacto-N-biosidase or beta N-acetylglucosamidase.
 
    0.825
lp_3647
ABC transporter, ATP-binding and permease protein.
 
    0.810
lp_3649
Transcription regulator, GntR family.
 
  
 0.802
lp_3648
ABC transporter, ATP-binding and permease protein.
 
    0.783
yesM
Two-component system histidine protein kinase; sensor protein.
 
    0.767
lp_3650
Regulator, Fis family.
 
    0.691
lp_3633
Transcription regulator, GntR family.
  
  
 0.678
lp_1228
Transcription regulator, AraC family.
  
     0.642
lp_3642
ABC transporter, substrate binding protein,mannose-related oligosaccharides.
 
  
 0.637
padA
Phenolic acid decarboxylase.
      
 0.636
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.