STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_3669DegV family protein. (288 aa)    
Predicted Functional Partners:
lp_1626
Phosphatase, dihydroxyacetone kinase family.
 
 0.988
rafR
Transcription regulator. LacI family, raffinose related.
  
  
 0.709
lp_3668
Acetyltransferase, GNAT family.
  
    0.605
lp_1625
General stress protein, Gls24 family.
 
    0.598
lp_0209
RNA-binding protein, DUF814 family.
  
  
 0.538
lp_3614
Oxidoreductase, medium chain dehydrogenase/reductase family (MDR).
      
 0.502
pbpX2
Serine-type D-Ala-D-Ala carboxypeptidase.
   
  
 0.458
lp_0932
Extracellular lipoprotein precursor.
   
  
 0.438
lp_2651
Transcription regulator, GntR family.
      
 0.433
lp_3570
Transposase.
      
 0.432
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.