STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ORW64205.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (482 aa)    
Predicted Functional Partners:
ORW69237.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.709
ORW68563.1
ABC oligopeptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.560
ORW64204.1
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.528
ORW75155.1
Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.527
ORW64203.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.407
Your Current Organism:
Mycobacterium saskatchewanense
NCBI taxonomy Id: 220927
Other names: ATCC BAA-544, CIP 108114, DSM 44616, JCM 13016, M. saskatchewanense, Mycobacterium saskatchewanense Turenne et al. 2004, strain 00-250
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.