Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AIN93124.1CAAX protease; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)    
Predicted Functional Partners:
AIN94396.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.653
AIN93654.1
CAAX protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.649
AIN93735.1
Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.452
AIN93012.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.421
AIN93953.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.421
AIN94024.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.421
AIN94025.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.417
Your Current Organism:
Treponema putidum
NCBI taxonomy Id: 221027
Other names: ATCC 700334, CIP 108088, OMZ 758, T. putidum, Treponema putidum Wyss et al. 2004, strain JZC3
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