Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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Databases
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[Homology]
Score
AIN93260.1Diamine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (160 aa)    
Predicted Functional Partners:
AIN94296.1
Spermidine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
0.927
AIN94163.1
Ornithine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
   
  0.907
AIN93646.1
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.903
AIN93214.1
Diamine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.900
AIN94385.1
Metallo-beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.668
AIN93259.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.515
AIN93261.1
Proline iminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S33 family.
       0.467
AIN93262.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.459
Your Current Organism:
Treponema putidum
NCBI taxonomy Id: 221027
Other names: ATCC 700334, CIP 108088, OMZ 758, T. putidum, Treponema putidum Wyss et al. 2004, strain JZC3
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