Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AIN93717.1Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)    
Predicted Functional Partners:
AIN93434.1
Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.977
AIN93716.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.923
AIN92826.1
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.904
AIN94710.1
Phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.869
AIN93324.1
Phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.844
AIN94261.1
Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.820
AIN92904.1
Phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.772
AIN94012.1
Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.731
AIN92996.1
Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.710
AIN94231.1
Phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.687
Your Current Organism:
Treponema putidum
NCBI taxonomy Id: 221027
Other names: ATCC 700334, CIP 108088, OMZ 758, T. putidum, Treponema putidum Wyss et al. 2004, strain JZC3
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