STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OB1822Cytochrome c biogenesis (thioredoxin); Thiol-disulfide oxidoreductase which is required in disulfide reduction during c-type cytochrome synthesis. May accept reducing equivalents from CcdA, leading to breakage of disulfide bonds in apocytochrome c; following this reduction heme can be covalently attached. (192 aa)    
Predicted Functional Partners:
ccdA
Holocytochrome c synthase; CDS_ID OB1677.
  
 0.888
OB1821
Cytochrome c biogenesis; CDS_ID OB1821.
  
  
 0.887
OB1820
Cytochrome c biogenesis; CDS_ID OB1820.
 
  
 0.847
OB1823
Ribosomal large subunit pseudouridylate synthase; CDS_ID OB1823; Belongs to the pseudouridine synthase RsuA family.
  
    0.659
OB1818
Two-component sensor histidine kinase; CDS_ID OB1818.
  
  
 0.605
spmB
Spore maturation protein; CDS_ID OB1824.
  
    0.534
spmA
Spore maturation protein; CDS_ID OB1825.
  
    0.530
dacB
D-alanyl-D-alanine carboxypeptidase (penicilin binding protein); CDS_ID OB1826; Belongs to the peptidase S11 family.
  
    0.500
OB1734
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
  
 0.498
OB0423
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.419
Your Current Organism:
Oceanobacillus iheyensis
NCBI taxonomy Id: 221109
Other names: O. iheyensis HTE831, Oceanobacillus iheyensis HTE831, Oceanobacillus iheyensis str. HTE831, Oceanobacillus iheyensis strain HTE831, marine firmicute HTE831
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.