node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OB0281 | OB0759 | gene:10732484 | gene:10732980 | Excinuclease ABC subunit A; CDS_ID OB0281. | ATP-dependent DNA helicase; CDS_ID OB0759. | 0.594 |
OB0281 | OB2116 | gene:10732484 | gene:10734364 | Excinuclease ABC subunit A; CDS_ID OB0281. | Excinuclease ABC subunit C (deoxyribodipyrimidine photolyase); The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.836 |
OB0281 | OB2130 | gene:10732484 | gene:10734378 | Excinuclease ABC subunit A; CDS_ID OB0281. | phenylalanyl-tRNA synthetase beta subunit; CDS_ID OB2130; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.404 |
OB0281 | OB2487 | gene:10732484 | gene:10734739 | Excinuclease ABC subunit A; CDS_ID OB0281. | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.911 |
OB0281 | OB2488 | gene:10732484 | gene:10734740 | Excinuclease ABC subunit A; CDS_ID OB0281. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.989 |
OB0281 | dnaA | gene:10732484 | gene:10732162 | Excinuclease ABC subunit A; CDS_ID OB0281. | Chromosomal replication initiation protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. | 0.419 |
OB0281 | polA | gene:10732484 | gene:10734411 | Excinuclease ABC subunit A; CDS_ID OB0281. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.572 |
OB0281 | recA | gene:10732484 | gene:10733864 | Excinuclease ABC subunit A; CDS_ID OB0281. | Multifunctional protein involved in homologous recombination (recombinase); Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.528 |
OB0281 | ruvA | gene:10732484 | gene:10734283 | Excinuclease ABC subunit A; CDS_ID OB0281. | Holliday junction DNA helicase; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.453 |
OB0759 | OB0281 | gene:10732980 | gene:10732484 | ATP-dependent DNA helicase; CDS_ID OB0759. | Excinuclease ABC subunit A; CDS_ID OB0281. | 0.594 |
OB0759 | OB2116 | gene:10732980 | gene:10734364 | ATP-dependent DNA helicase; CDS_ID OB0759. | Excinuclease ABC subunit C (deoxyribodipyrimidine photolyase); The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.795 |
OB0759 | OB2130 | gene:10732980 | gene:10734378 | ATP-dependent DNA helicase; CDS_ID OB0759. | phenylalanyl-tRNA synthetase beta subunit; CDS_ID OB2130; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.475 |
OB0759 | OB2487 | gene:10732980 | gene:10734739 | ATP-dependent DNA helicase; CDS_ID OB0759. | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.629 |
OB0759 | OB2488 | gene:10732980 | gene:10734740 | ATP-dependent DNA helicase; CDS_ID OB0759. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.907 |
OB0759 | dnaA | gene:10732980 | gene:10732162 | ATP-dependent DNA helicase; CDS_ID OB0759. | Chromosomal replication initiation protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. | 0.448 |
OB0759 | polA | gene:10732980 | gene:10734411 | ATP-dependent DNA helicase; CDS_ID OB0759. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.704 |
OB0759 | recA | gene:10732980 | gene:10733864 | ATP-dependent DNA helicase; CDS_ID OB0759. | Multifunctional protein involved in homologous recombination (recombinase); Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.910 |
OB0759 | ruvA | gene:10732980 | gene:10734283 | ATP-dependent DNA helicase; CDS_ID OB0759. | Holliday junction DNA helicase; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.537 |
OB2116 | OB0281 | gene:10734364 | gene:10732484 | Excinuclease ABC subunit C (deoxyribodipyrimidine photolyase); The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | Excinuclease ABC subunit A; CDS_ID OB0281. | 0.836 |
OB2116 | OB0759 | gene:10734364 | gene:10732980 | Excinuclease ABC subunit C (deoxyribodipyrimidine photolyase); The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | ATP-dependent DNA helicase; CDS_ID OB0759. | 0.795 |