STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OB2797L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (494 aa)    
Predicted Functional Partners:
OB2798
L-ribulose-5-phosphate 4-epimerase; CDS_ID OB2798.
 
 
 0.995
OB2799
Hypothetical conserved protein; CDS_ID OB2799.
 
  
 0.961
OB2087
Xylosidase : arabinofuranosidase; CDS_ID OB2087; Belongs to the glycosyl hydrolase 43 family.
 
 
 0.923
OB3125
Xylan 1,4-beta-xylosidase (beta xylosidase) (EC 3.2.1.37); CDS_ID OB3125; Belongs to the glycosyl hydrolase 43 family.
 
 
 0.912
OB2800
Transcriptional repressor of the arabinose operon; CDS_ID OB2800.
 
   
 0.833
OB2796
Hypothetical conserved protein; CDS_ID OB2796; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
 
     0.769
OB3119
Xylose isomerase; CDS_ID OB3119; Belongs to the xylose isomerase family.
 
   
 0.507
OB0497
Rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde.
  
  
 0.505
OB3254
L-fuculose-phosphate aldolase; CDS_ID OB3254.
  
  
 0.505
OB3004
Transaldolase (pentose phosphate); Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
  
  
 0.444
Your Current Organism:
Oceanobacillus iheyensis
NCBI taxonomy Id: 221109
Other names: O. iheyensis HTE831, Oceanobacillus iheyensis HTE831, Oceanobacillus iheyensis str. HTE831, Oceanobacillus iheyensis strain HTE831, marine firmicute HTE831
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