Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OB0182 | OB1020 | gene:10732372 | gene:10733258 | Thioredoxin; CDS_ID OB0182; Belongs to the Tlp family. | Spore coat protein; CDS_ID OB1020; Belongs to the SspP family. | 0.473 |
OB0182 | sspF | gene:10732372 | gene:10732216 | Thioredoxin; CDS_ID OB0182; Belongs to the Tlp family. | Small acid-soluble spore protein (minor alpha:beta-type SASP); CDS_ID OB0054. | 0.634 |
OB1019 | OB1020 | gene:10733257 | gene:10733258 | Cold shock protein; CDS_ID OB1019. | Spore coat protein; CDS_ID OB1020; Belongs to the SspP family. | 0.464 |
OB1020 | OB0182 | gene:10733258 | gene:10732372 | Spore coat protein; CDS_ID OB1020; Belongs to the SspP family. | Thioredoxin; CDS_ID OB0182; Belongs to the Tlp family. | 0.473 |
OB1020 | OB1019 | gene:10733258 | gene:10733257 | Spore coat protein; CDS_ID OB1020; Belongs to the SspP family. | Cold shock protein; CDS_ID OB1019. | 0.464 |
OB1020 | sspF | gene:10733258 | gene:10732216 | Spore coat protein; CDS_ID OB1020; Belongs to the SspP family. | Small acid-soluble spore protein (minor alpha:beta-type SASP); CDS_ID OB0054. | 0.514 |
sspF | OB0182 | gene:10732216 | gene:10732372 | Small acid-soluble spore protein (minor alpha:beta-type SASP); CDS_ID OB0054. | Thioredoxin; CDS_ID OB0182; Belongs to the Tlp family. | 0.634 |
sspF | OB1020 | gene:10732216 | gene:10733258 | Small acid-soluble spore protein (minor alpha:beta-type SASP); CDS_ID OB0054. | Spore coat protein; CDS_ID OB1020; Belongs to the SspP family. | 0.514 |