STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OB1731gamma-D-glutamyl-L-diamino acid endopeptidase I; CDS_ID OB1731. (396 aa)    
Predicted Functional Partners:
OB1729
Rieske [2Fe-2S] iron-sulfur protein; CDS_ID OB1729.
 
    0.600
OB1805
Hypothetical conserved protein; Required for spore cortex hydrolysis during germination. Appears to be required for either expression, localization, activation or function of SleB (By similarity).
  
     0.563
OB1730
Ferredoxin [3Fe-4S][4Fe-4S]; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
       0.532
OB1806
Sporulation specific N-acetylmuramoyl-L-alanine amidase (spore cortex-lytic enzyme); Required for spore cortex hydrolysis during germination.
 
  
 0.521
OB1509
Serine:threonine protein kinase; CDS_ID OB1509.
  
  
 0.487
OB0024
Hypothetical conserved protein; CDS_ID OB0024.
 
     0.442
OB0076
Serine:threonine protein kinase; CDS_ID OB0076.
 
  
 0.440
OB0482
Spore germination protein; CDS_ID OB0482.
  
     0.436
OB2403
Hypothetical conserved protein; CDS_ID OB2403.
  
  
 0.432
OB0907
Hypothetical conserved protein; CDS_ID OB0907.
 
    0.430
Your Current Organism:
Oceanobacillus iheyensis
NCBI taxonomy Id: 221109
Other names: O. iheyensis HTE831, Oceanobacillus iheyensis HTE831, Oceanobacillus iheyensis str. HTE831, Oceanobacillus iheyensis strain HTE831, marine firmicute HTE831
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.