STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OB3204L-seryl-tRNA(Sec) selenium transferase (selenocysteine synthase); CDS_ID OB3204. (355 aa)    
Predicted Functional Partners:
OB3205
Hypothetical conserved protein; CDS_ID OB3205.
 
  
 0.975
OB3203
Hypothetical protein; CDS_ID OB3203.
 
    0.972
OB0012
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
    
 0.927
OB3202
2-dehydro-3-deoxygluconokinase; CDS_ID OB3202.
 
    0.837
OB3201
Transcriptional regulator (GntR family); CDS_ID OB3201.
 
     0.823
OB3206
beta-N-acetylhexosaminidase (beta-hexosaminidase); CDS_ID OB3206.
       0.468
OB1407
Potassium uptake protein; CDS_ID OB1407.
   
    0.445
OB1662
Hypothetical conserved protein; CDS_ID OB1662.
   
    0.445
OB2334
Potassium channel protein; CDS_ID OB2334.
   
    0.445
OB3278
Potassium channel protein; CDS_ID OB3278.
   
    0.445
Your Current Organism:
Oceanobacillus iheyensis
NCBI taxonomy Id: 221109
Other names: O. iheyensis HTE831, Oceanobacillus iheyensis HTE831, Oceanobacillus iheyensis str. HTE831, Oceanobacillus iheyensis strain HTE831, marine firmicute HTE831
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.