Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFB87091.1 | SFC25698.1 | SAMN04489722_101141 | SAMN04489722_10272 | L-serine dehydratase. | Aspartate kinase. | 0.672 |
SFB87091.1 | SFC39655.1 | SAMN04489722_101141 | SAMN04489722_102350 | L-serine dehydratase. | Phosphoserine phosphatase. | 0.826 |
SFB87091.1 | SFD23754.1 | SAMN04489722_101141 | SAMN04489722_106167 | L-serine dehydratase. | Serine O-acetyltransferase. | 0.700 |
SFB87091.1 | SFD24497.1 | SAMN04489722_101141 | SAMN04489722_106193 | L-serine dehydratase. | Homoserine O-acetyltransferase. | 0.899 |
SFB87091.1 | SFD68187.1 | SAMN04489722_101141 | SAMN04489722_11533 | L-serine dehydratase. | Cystathionine beta-synthase. | 0.701 |
SFB87091.1 | glyA | SAMN04489722_101141 | SAMN04489722_101100 | L-serine dehydratase. | Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.814 |
SFB87091.1 | ilvA | SAMN04489722_101141 | SAMN04489722_105301 | L-serine dehydratase. | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.754 |
SFB87091.1 | thrB | SAMN04489722_101141 | SAMN04489722_10271 | L-serine dehydratase. | Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily. | 0.732 |
SFB87091.1 | trpA | SAMN04489722_101141 | SAMN04489722_112122 | L-serine dehydratase. | Tryptophan synthase, alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.700 |
SFB87091.1 | trpF | SAMN04489722_101141 | SAMN04489722_112124 | L-serine dehydratase. | Phosphoribosylanthranilate isomerase; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine; Belongs to the TrpF family. | 0.735 |
SFC25698.1 | SFB87091.1 | SAMN04489722_10272 | SAMN04489722_101141 | Aspartate kinase. | L-serine dehydratase. | 0.672 |
SFC25698.1 | SFC39655.1 | SAMN04489722_10272 | SAMN04489722_102350 | Aspartate kinase. | Phosphoserine phosphatase. | 0.949 |
SFC25698.1 | SFD23754.1 | SAMN04489722_10272 | SAMN04489722_106167 | Aspartate kinase. | Serine O-acetyltransferase. | 0.740 |
SFC25698.1 | SFD24497.1 | SAMN04489722_10272 | SAMN04489722_106193 | Aspartate kinase. | Homoserine O-acetyltransferase. | 0.995 |
SFC25698.1 | SFD68187.1 | SAMN04489722_10272 | SAMN04489722_11533 | Aspartate kinase. | Cystathionine beta-synthase. | 0.779 |
SFC25698.1 | glyA | SAMN04489722_10272 | SAMN04489722_101100 | Aspartate kinase. | Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.838 |
SFC25698.1 | ilvA | SAMN04489722_10272 | SAMN04489722_105301 | Aspartate kinase. | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.917 |
SFC25698.1 | thrB | SAMN04489722_10272 | SAMN04489722_10271 | Aspartate kinase. | Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily. | 0.999 |
SFC25698.1 | trpA | SAMN04489722_10272 | SAMN04489722_112122 | Aspartate kinase. | Tryptophan synthase, alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.870 |
SFC25698.1 | trpF | SAMN04489722_10272 | SAMN04489722_112124 | Aspartate kinase. | Phosphoribosylanthranilate isomerase; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine; Belongs to the TrpF family. | 0.955 |
page 1 of 6