STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC05064.12-deoxy-D-gluconate 3-dehydrogenase. (256 aa)    
Predicted Functional Partners:
SFD56304.1
Predicted O-methyltransferase YrrM.
 
  
   0.902
SFC05011.1
2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
 
  0.876
SFC05249.1
L-alanine-DL-glutamate epimerase.
  
  0.874
SFD52151.1
Amino acid adenylation domain-containing protein.
 
 0.862
SFC05102.1
Beta-mannosidase.
 
 
  0.834
SFD12996.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.803
SFC74376.1
Glutamate synthase (NADH) large subunit; Belongs to the glutamate synthase family.
     
 0.802
SFD52176.1
Amino acid adenylation domain-containing protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.796
SFC05154.1
Lactaldehyde dehydrogenase / glycolaldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  0.794
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
 0.794
Your Current Organism:
Algibacter lectus
NCBI taxonomy Id: 221126
Other names: A. lectus, Algibacter lectus Nedashkovskaya et al. 2004, Bacteroidetes bacterium KMM 3902, Bacteroidetes bacterium KMM 3914, DSM 15365, JCM 21761, KCTC 12103, KMM 3902
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.