STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC23270.1Multidrug resistance protein, MATE family. (459 aa)    
Predicted Functional Partners:
SFC23323.1
Hypothetical protein.
 
     0.707
SFD67968.1
SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
  
    0.533
SFC23107.1
Por secretion system C-terminal sorting domain-containing protein.
       0.531
SFC23169.1
Enoyl-[acyl-carrier protein] reductase II.
       0.531
SFC83672.1
Phytoene/squalene synthetase.
   
   0.517
SFC23364.1
Undecaprenyl-diphosphatase.
  
    0.516
SFC23063.1
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase.
       0.481
SFD70483.1
Quaternary ammonium compound-resistance protein SugE.
      
 0.433
SFB90653.1
Na+-driven multidrug efflux pump.
  
     0.422
Your Current Organism:
Algibacter lectus
NCBI taxonomy Id: 221126
Other names: A. lectus, Algibacter lectus Nedashkovskaya et al. 2004, Bacteroidetes bacterium KMM 3902, Bacteroidetes bacterium KMM 3914, DSM 15365, JCM 21761, KCTC 12103, KMM 3902
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