STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uxaCD-glucuronate isomerase. (471 aa)    
Predicted Functional Partners:
uxuA
D-mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.989
SFC41775.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.941
SFC00807.1
Tagaturonate reductase.
 
 
 0.908
SFD19404.1
Xylan 1,4-beta-xylosidase.
  
  
  0.866
SFD30976.1
Inositol oxygenase.
    
  0.852
SFD12121.1
Mannitol 2-dehydrogenase.
 
 
 0.767
SFD12185.1
Mannitol 2-dehydrogenase.
 
 
 0.765
SFC41538.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  
 0.764
SFC41603.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
   
 0.740
SFD19276.1
Altronate hydrolase.
  
 0.739
Your Current Organism:
Algibacter lectus
NCBI taxonomy Id: 221126
Other names: A. lectus, Algibacter lectus Nedashkovskaya et al. 2004, Bacteroidetes bacterium KMM 3902, Bacteroidetes bacterium KMM 3914, DSM 15365, JCM 21761, KCTC 12103, KMM 3902
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