STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC46210.1Iron complex outermembrane recepter protein. (771 aa)    
Predicted Functional Partners:
SFC46122.1
HAMP domain-containing protein.
 
     0.851
SFD62550.1
Ig-like domain (group 2).
  
 
   0.819
SFC46251.1
Protein of unknown function.
       0.773
SFC46161.1
Hypothetical protein.
       0.718
SFC46010.1
Signal transduction histidine kinase.
 
     0.703
SFC46067.1
Response regulator receiver domain-containing protein.
 
     0.664
SFC31328.1
Glyoxylase, beta-lactamase superfamily II.
  
     0.611
SFD65148.1
Putative cyclase.
  
     0.583
SFD74353.1
SprB repeat-containing protein.
  
 
   0.569
SFD73179.1
SprB repeat-containing protein.
  
 
   0.548
Your Current Organism:
Algibacter lectus
NCBI taxonomy Id: 221126
Other names: A. lectus, Algibacter lectus Nedashkovskaya et al. 2004, Bacteroidetes bacterium KMM 3902, Bacteroidetes bacterium KMM 3914, DSM 15365, JCM 21761, KCTC 12103, KMM 3902
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