STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC49143.1TIGR02757 family protein. (261 aa)    
Predicted Functional Partners:
SFC94570.1
Exodeoxyribonuclease-3.
  
 0.841
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 
 0.661
SFC94540.1
Chemotaxis protein MotB.
  
 
   0.507
SFD50985.1
Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; Belongs to the uracil-DNA glycosylase (UDG) superfamily. UNG family.
    
 0.487
SFD56720.1
Hypothetical protein.
 
     0.481
SFC49199.1
GAF domain-containing protein.
  
    0.479
SFC92576.1
Acyl-protein synthetase, LuxE.
  
     0.478
SFD57947.1
DNA mismatch repair protein MutL.
   
 
 0.476
SFC76251.1
A/G-specific DNA-adenine glycosylase; Adenine glycosylase active on G-A mispairs.
  
 
 0.471
SFD51103.1
Chemotaxis protein MotB.
    
   0.438
Your Current Organism:
Algibacter lectus
NCBI taxonomy Id: 221126
Other names: A. lectus, Algibacter lectus Nedashkovskaya et al. 2004, Bacteroidetes bacterium KMM 3902, Bacteroidetes bacterium KMM 3914, DSM 15365, JCM 21761, KCTC 12103, KMM 3902
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