STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC64097.1O-antigen ligase. (407 aa)    
Predicted Functional Partners:
SFC63837.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
 
  
 0.853
SFC63995.1
Glycosyltransferase involved in cell wall bisynthesis.
 
 
  0.828
SFD24901.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
  
  
 0.800
SFC63941.1
UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain.
  
  
 0.797
SFD35755.1
3-deoxy-D-manno-octulosonic-acid transferase.
    
 0.795
SFC64247.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
  
 0.790
SFC63886.1
dTDP-glucose 4,6-dehydratase.
     
 0.774
SFC64046.1
Nucleoside-diphosphate-sugar epimerase.
     
 0.774
SFC64143.1
Hypothetical protein.
       0.741
SFC64205.1
Hypothetical protein.
       0.741
Your Current Organism:
Algibacter lectus
NCBI taxonomy Id: 221126
Other names: A. lectus, Algibacter lectus Nedashkovskaya et al. 2004, Bacteroidetes bacterium KMM 3902, Bacteroidetes bacterium KMM 3914, DSM 15365, JCM 21761, KCTC 12103, KMM 3902
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