Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFB86103.1 | SFC98503.1 | SAMN04489722_101118 | SAMN04489722_104224 | methionyl-tRNA formyltransferase. | 5-formyltetrahydrofolate cyclo-ligase. | 0.815 |
SFB86103.1 | folD | SAMN04489722_101118 | SAMN04489722_108150 | methionyl-tRNA formyltransferase. | Methylenetetrahydrofolate dehydrogenase (NADP+); Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | 0.954 |
SFB86103.1 | pheT | SAMN04489722_101118 | SAMN04489722_11638 | methionyl-tRNA formyltransferase. | phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.700 |
SFB86103.1 | purH | SAMN04489722_101118 | SAMN04489722_108115 | methionyl-tRNA formyltransferase. | Phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase. | 0.856 |
SFB86103.1 | purN | SAMN04489722_101118 | SAMN04489722_104258 | methionyl-tRNA formyltransferase. | Formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate. | 0.897 |
SFC43644.1 | SFC98503.1 | SAMN04489722_102422 | SAMN04489722_104224 | Molybdenum cofactor biosynthesis protein MoaC. | 5-formyltetrahydrofolate cyclo-ligase. | 0.509 |
SFC98503.1 | SFB86103.1 | SAMN04489722_104224 | SAMN04489722_101118 | 5-formyltetrahydrofolate cyclo-ligase. | methionyl-tRNA formyltransferase. | 0.815 |
SFC98503.1 | SFC43644.1 | SAMN04489722_104224 | SAMN04489722_102422 | 5-formyltetrahydrofolate cyclo-ligase. | Molybdenum cofactor biosynthesis protein MoaC. | 0.509 |
SFC98503.1 | SFC98576.1 | SAMN04489722_104224 | SAMN04489722_104225 | 5-formyltetrahydrofolate cyclo-ligase. | Hypothetical protein. | 0.760 |
SFC98503.1 | SFC98618.1 | SAMN04489722_104224 | SAMN04489722_104226 | 5-formyltetrahydrofolate cyclo-ligase. | SSU ribosomal protein S6P modification protein; Belongs to the RimK family. | 0.745 |
SFC98503.1 | SFC98651.1 | SAMN04489722_104224 | SAMN04489722_104227 | 5-formyltetrahydrofolate cyclo-ligase. | Uncharacterized conserved protein. | 0.756 |
SFC98503.1 | folD | SAMN04489722_104224 | SAMN04489722_108150 | 5-formyltetrahydrofolate cyclo-ligase. | Methylenetetrahydrofolate dehydrogenase (NADP+); Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | 0.896 |
SFC98503.1 | pheT | SAMN04489722_104224 | SAMN04489722_11638 | 5-formyltetrahydrofolate cyclo-ligase. | phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.449 |
SFC98503.1 | purH | SAMN04489722_104224 | SAMN04489722_108115 | 5-formyltetrahydrofolate cyclo-ligase. | Phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase. | 0.475 |
SFC98503.1 | purN | SAMN04489722_104224 | SAMN04489722_104258 | 5-formyltetrahydrofolate cyclo-ligase. | Formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate. | 0.895 |
SFC98503.1 | ybeY | SAMN04489722_104224 | SAMN04489722_10377 | 5-formyltetrahydrofolate cyclo-ligase. | rRNA maturation RNase YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.425 |
SFC98576.1 | SFC98503.1 | SAMN04489722_104225 | SAMN04489722_104224 | Hypothetical protein. | 5-formyltetrahydrofolate cyclo-ligase. | 0.760 |
SFC98576.1 | SFC98618.1 | SAMN04489722_104225 | SAMN04489722_104226 | Hypothetical protein. | SSU ribosomal protein S6P modification protein; Belongs to the RimK family. | 0.955 |
SFC98576.1 | SFC98651.1 | SAMN04489722_104225 | SAMN04489722_104227 | Hypothetical protein. | Uncharacterized conserved protein. | 0.953 |
SFC98618.1 | SFC98503.1 | SAMN04489722_104226 | SAMN04489722_104224 | SSU ribosomal protein S6P modification protein; Belongs to the RimK family. | 5-formyltetrahydrofolate cyclo-ligase. | 0.745 |
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