STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD00547.1Transcriptional regulator, LacI family. (357 aa)    
Predicted Functional Partners:
SFC74376.1
Glutamate synthase (NADH) large subunit; Belongs to the glutamate synthase family.
    
 
 0.798
SFC06040.1
Transcriptional regulator, LacI family.
  
     0.759
SFD00346.1
Glycosidase.
 
 
  0.709
SFD00510.1
Maltose/moltooligosaccharide transporter.
 
   
 0.652
SFD52151.1
Amino acid adenylation domain-containing protein.
    
 
 0.643
SFD00585.1
Iron complex outermembrane recepter protein.
 
     0.599
SFD00626.1
Starch-binding associating with outer membrane.
 
     0.591
SFB82711.1
6-phosphogluconate dehydrogenase; Belongs to the 6-phosphogluconate dehydrogenase family.
  
 
 0.563
SFD00220.1
Alpha-amylase.
 
 
  0.561
SFD00462.1
Beta-phosphoglucomutase.
 
     0.557
Your Current Organism:
Algibacter lectus
NCBI taxonomy Id: 221126
Other names: A. lectus, Algibacter lectus Nedashkovskaya et al. 2004, Bacteroidetes bacterium KMM 3902, Bacteroidetes bacterium KMM 3914, DSM 15365, JCM 21761, KCTC 12103, KMM 3902
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