STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC93513.1Two component transcriptional regulator, LytTR family. (245 aa)    
Predicted Functional Partners:
SFC93485.1
Tetratricopeptide repeat-containing protein.
 
  0.958
SFC81606.1
Histidine kinase.
  
  0.857
SFD52744.1
GHKL domain-containing protein.
  
  0.855
SFC28934.1
Histidine kinase.
  
  0.854
SFC45917.1
Hypothetical protein.
  
  0.853
SFC96114.1
7TM diverse intracellular signalling.
 
  0.822
SFC67171.1
Histidine kinase.
  
  0.821
SFD72624.1
Tetratricopeptide repeat-containing protein.
 
  0.816
SFD61078.1
Histidine kinase.
  
  0.815
SFD66368.1
Hypothetical protein.
  
  0.814
Your Current Organism:
Algibacter lectus
NCBI taxonomy Id: 221126
Other names: A. lectus, Algibacter lectus Nedashkovskaya et al. 2004, Bacteroidetes bacterium KMM 3902, Bacteroidetes bacterium KMM 3914, DSM 15365, JCM 21761, KCTC 12103, KMM 3902
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.