STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD12968.1DNA-binding transcriptional regulator, MarR family. (163 aa)    
Predicted Functional Partners:
SFD12996.1
3-hydroxyacyl-CoA dehydrogenase.
     
 0.830
SFD13027.1
acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
       0.810
SFD13055.1
Acyl-CoA dehydrogenase.
 
  
  0.796
SFD08205.1
Phage shock protein PspC (stress-responsive transcriptional regulator).
 
   
 0.664
SFC41177.1
Conserved hypothetical protein 95.
  
     0.626
SFD12927.1
Long-chain acyl-CoA synthetase.
       0.624
SFC99899.1
PD-(D/E)XK nuclease superfamily protein.
  
     0.519
SFC64865.1
Hypothetical protein.
  
     0.495
SFC93833.1
NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family.
 
  
  0.476
SFC99862.1
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains).
  
    0.469
Your Current Organism:
Algibacter lectus
NCBI taxonomy Id: 221126
Other names: A. lectus, Algibacter lectus Nedashkovskaya et al. 2004, Bacteroidetes bacterium KMM 3902, Bacteroidetes bacterium KMM 3914, DSM 15365, JCM 21761, KCTC 12103, KMM 3902
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