STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD05643.1Hypothetical protein. (394 aa)    
Predicted Functional Partners:
SFC41004.1
Protein of unknown function.
 
     0.788
SFC65352.1
Hypothetical protein.
 
     0.782
SFC70191.1
TolA-binding protein.
  
     0.772
SFD35583.1
Protein of unknown function DUF58.
  
     0.772
SFD48758.1
N-terminal double-transmembrane domain-containing protein.
  
     0.770
SFC33647.1
Hypothetical protein.
  
     0.769
SFD05614.1
EF-hand domain pair.
       0.645
SFD05586.1
Secondary thiamine-phosphate synthase enzyme.
       0.616
SFC34084.1
Response regulator receiver domain-containing protein.
  
     0.607
SFD11824.1
UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase.
  
     0.540
Your Current Organism:
Algibacter lectus
NCBI taxonomy Id: 221126
Other names: A. lectus, Algibacter lectus Nedashkovskaya et al. 2004, Bacteroidetes bacterium KMM 3902, Bacteroidetes bacterium KMM 3914, DSM 15365, JCM 21761, KCTC 12103, KMM 3902
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.