STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD30231.1Hypothetical protein. (712 aa)    
Predicted Functional Partners:
SFD30215.1
Hypothetical protein.
 
     0.816
SFD30468.1
Peptidase family M28.
  
 
  0.573
SFC94641.1
Peptidase family M28.
  
 
  0.555
SFD30249.1
Sec-independent protein translocase protein TatA.
       0.519
SFD37924.1
Dipeptidyl-peptidase-4.
  
     0.518
SFB86949.1
Dipeptidyl-peptidase-4.
  
     0.442
SFC33910.1
acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
      0.435
SFD25856.1
PA domain-containing protein.
  
 
  0.403
Your Current Organism:
Algibacter lectus
NCBI taxonomy Id: 221126
Other names: A. lectus, Algibacter lectus Nedashkovskaya et al. 2004, Bacteroidetes bacterium KMM 3902, Bacteroidetes bacterium KMM 3914, DSM 15365, JCM 21761, KCTC 12103, KMM 3902
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.