Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFC38981.1 | SFC73257.1 | SAMN04489722_102338 | SAMN04489722_103296 | GMP synthase (glutamine-hydrolysing). | Guanylate kinase. | 0.972 |
SFC38981.1 | SFD11006.1 | SAMN04489722_102338 | SAMN04489722_105183 | GMP synthase (glutamine-hydrolysing). | Adenylosuccinate lyase. | 0.889 |
SFC38981.1 | SFD42268.1 | SAMN04489722_102338 | SAMN04489722_10995 | GMP synthase (glutamine-hydrolysing). | DNA-directed RNA polymerase subunit alpha. | 0.868 |
SFC38981.1 | adk | SAMN04489722_102338 | SAMN04489722_108122 | GMP synthase (glutamine-hydrolysing). | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. | 0.967 |
SFC38981.1 | ftsH | SAMN04489722_102338 | SAMN04489722_11282 | GMP synthase (glutamine-hydrolysing). | Cell division protease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. | 0.436 |
SFC38981.1 | guaB | SAMN04489722_102338 | SAMN04489722_10542 | GMP synthase (glutamine-hydrolysing). | IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.999 |
SFC38981.1 | rpsH | SAMN04489722_102338 | SAMN04489722_10984 | GMP synthase (glutamine-hydrolysing). | SSU ribosomal protein S8P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.543 |
SFC38981.1 | rpsK | SAMN04489722_102338 | SAMN04489722_10993 | GMP synthase (glutamine-hydrolysing). | SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.750 |
SFC73257.1 | SFC38981.1 | SAMN04489722_103296 | SAMN04489722_102338 | Guanylate kinase. | GMP synthase (glutamine-hydrolysing). | 0.972 |
SFC73257.1 | SFC94710.1 | SAMN04489722_103296 | SAMN04489722_104122 | Guanylate kinase. | Ribonucleoside-diphosphate reductase beta chain. | 0.888 |
SFC73257.1 | SFD05614.1 | SAMN04489722_103296 | SAMN04489722_1058 | Guanylate kinase. | EF-hand domain pair. | 0.951 |
SFC73257.1 | SFD11006.1 | SAMN04489722_103296 | SAMN04489722_105183 | Guanylate kinase. | Adenylosuccinate lyase. | 0.413 |
SFC73257.1 | adk | SAMN04489722_103296 | SAMN04489722_108122 | Guanylate kinase. | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. | 0.970 |
SFC73257.1 | guaB | SAMN04489722_103296 | SAMN04489722_10542 | Guanylate kinase. | IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.588 |
SFC94710.1 | SFC73257.1 | SAMN04489722_104122 | SAMN04489722_103296 | Ribonucleoside-diphosphate reductase beta chain. | Guanylate kinase. | 0.888 |
SFC94710.1 | SFD11006.1 | SAMN04489722_104122 | SAMN04489722_105183 | Ribonucleoside-diphosphate reductase beta chain. | Adenylosuccinate lyase. | 0.501 |
SFC94710.1 | adk | SAMN04489722_104122 | SAMN04489722_108122 | Ribonucleoside-diphosphate reductase beta chain. | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. | 0.942 |
SFC94710.1 | ftsH | SAMN04489722_104122 | SAMN04489722_11282 | Ribonucleoside-diphosphate reductase beta chain. | Cell division protease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. | 0.408 |
SFD05614.1 | SFC73257.1 | SAMN04489722_1058 | SAMN04489722_103296 | EF-hand domain pair. | Guanylate kinase. | 0.951 |
SFD05614.1 | adk | SAMN04489722_1058 | SAMN04489722_108122 | EF-hand domain pair. | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. | 0.995 |
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