STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD41543.1TonB-linked outer membrane protein, SusC/RagA family. (1035 aa)    
Predicted Functional Partners:
SFD41520.1
Starch-binding associating with outer membrane.
   
 0.946
SFD41493.1
Hypothetical protein.
       0.756
SFB87178.1
Starch-binding associating with outer membrane.
 
     0.740
SFD41591.1
Starch-binding associating with outer membrane.
   
 0.715
SFC05727.1
Starch-binding associating with outer membrane.
  
     0.673
SFD52586.1
Starch-binding associating with outer membrane.
  
     0.654
SFB87739.1
Starch-binding associating with outer membrane.
  
     0.628
SFD60427.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.616
SFB88574.1
Starch-binding associating with outer membrane.
  
     0.614
SFC04743.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.597
Your Current Organism:
Algibacter lectus
NCBI taxonomy Id: 221126
Other names: A. lectus, Algibacter lectus Nedashkovskaya et al. 2004, Bacteroidetes bacterium KMM 3902, Bacteroidetes bacterium KMM 3914, DSM 15365, JCM 21761, KCTC 12103, KMM 3902
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.