STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD58711.1DNA-binding transcriptional regulator YhcF, GntR family. (328 aa)    
Predicted Functional Partners:
SFD58737.1
Xylulokinase.
 
   0.922
SFC74376.1
Glutamate synthase (NADH) large subunit; Belongs to the glutamate synthase family.
   
 
 0.862
SFB82711.1
6-phosphogluconate dehydrogenase; Belongs to the 6-phosphogluconate dehydrogenase family.
  
 
 0.673
SFD52151.1
Amino acid adenylation domain-containing protein.
   
 
 0.645
SFB98537.1
DNA-binding response regulator; ABC-type sugar transport system, substrate-binding protein, contains N-terminal xre family HTH domain.
  
 0.627
gatB
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.
 
 
   0.603
SFC97773.1
Transcriptional regulator, contains XRE-family HTH domain.
 
     0.567
SFD58779.1
D-xylose isomerase.
     
 0.561
SFC38981.1
GMP synthase (glutamine-hydrolysing).
  
   0.538
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
   
   0.515
Your Current Organism:
Algibacter lectus
NCBI taxonomy Id: 221126
Other names: A. lectus, Algibacter lectus Nedashkovskaya et al. 2004, Bacteroidetes bacterium KMM 3902, Bacteroidetes bacterium KMM 3914, DSM 15365, JCM 21761, KCTC 12103, KMM 3902
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