STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD61198.1Hypothetical protein. (341 aa)    
Predicted Functional Partners:
SFD48344.1
Beta-barrel assembly machine subunit BamD.
   
 
 0.696
SFD43031.1
Surface antigen variable number repeat-containing protein.
   
   0.543
SFD41001.1
Beta-barrel assembly machine subunit BamA.
   
   0.543
SFD41635.1
Hypothetical protein.
   
   0.543
SFD40414.1
Surface antigen.
   
   0.543
SFD61185.1
SusD family protein.
       0.542
SFC78529.1
Hypothetical protein.
   
   0.531
SFD61139.1
Protein of unknown function.
       0.531
SFD61163.1
TonB-linked outer membrane protein, SusC/RagA family.
       0.531
SFD61216.1
Hypothetical protein.
       0.506
Your Current Organism:
Algibacter lectus
NCBI taxonomy Id: 221126
Other names: A. lectus, Algibacter lectus Nedashkovskaya et al. 2004, Bacteroidetes bacterium KMM 3902, Bacteroidetes bacterium KMM 3914, DSM 15365, JCM 21761, KCTC 12103, KMM 3902
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.