STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD62121.1Protein of unknown function. (423 aa)    
Predicted Functional Partners:
SFD62208.1
DNA uptake protein ComE.
 
     0.769
SFD62141.1
Hypothetical protein.
 
     0.678
SFD62163.1
Voltage-gated potassium channel.
       0.589
SFC71295.1
DNA processing protein.
 
     0.577
SFD46905.1
OstA-like protein.
  
     0.559
SFD62099.1
Protein of unknown function.
       0.529
SFD38027.1
Competence protein ComEC.
  
     0.507
SFC91317.1
Cell surface protein SprA.
  
     0.459
SFC94366.1
comF family protein.
  
     0.455
SFC40073.1
Hypothetical protein.
  
     0.449
Your Current Organism:
Algibacter lectus
NCBI taxonomy Id: 221126
Other names: A. lectus, Algibacter lectus Nedashkovskaya et al. 2004, Bacteroidetes bacterium KMM 3902, Bacteroidetes bacterium KMM 3914, DSM 15365, JCM 21761, KCTC 12103, KMM 3902
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.