Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFC25698.1 | SFD13687.1 | SAMN04489722_10272 | SAMN04489722_105272 | Aspartate kinase. | 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. | 0.517 |
SFC25698.1 | SFD14550.1 | SAMN04489722_10272 | SAMN04489722_105305 | Aspartate kinase. | Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. | 0.665 |
SFC25698.1 | SFD24497.1 | SAMN04489722_10272 | SAMN04489722_106193 | Aspartate kinase. | Homoserine O-acetyltransferase. | 0.995 |
SFC25698.1 | SFD65944.1 | SAMN04489722_10272 | SAMN04489722_114110 | Aspartate kinase. | Branched-chain amino acid aminotransferase. | 0.876 |
SFC25698.1 | ilvA | SAMN04489722_10272 | SAMN04489722_105301 | Aspartate kinase. | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.917 |
SFC25698.1 | thrB | SAMN04489722_10272 | SAMN04489722_10271 | Aspartate kinase. | Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily. | 0.999 |
SFC26086.1 | SFD13687.1 | SAMN04489722_10279 | SAMN04489722_105272 | 2-oxoisovalerate dehydrogenase E1 component. | 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. | 0.694 |
SFC26086.1 | SFD52151.1 | SAMN04489722_10279 | SAMN04489722_11159 | 2-oxoisovalerate dehydrogenase E1 component. | Amino acid adenylation domain-containing protein. | 0.513 |
SFC26086.1 | SFD65944.1 | SAMN04489722_10279 | SAMN04489722_114110 | 2-oxoisovalerate dehydrogenase E1 component. | Branched-chain amino acid aminotransferase. | 0.908 |
SFC26086.1 | SFD67590.1 | SAMN04489722_10279 | SAMN04489722_1155 | 2-oxoisovalerate dehydrogenase E1 component. | Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component. | 0.999 |
SFC26086.1 | ilvA | SAMN04489722_10279 | SAMN04489722_105301 | 2-oxoisovalerate dehydrogenase E1 component. | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.891 |
SFD13687.1 | SFC25698.1 | SAMN04489722_105272 | SAMN04489722_10272 | 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. | Aspartate kinase. | 0.517 |
SFD13687.1 | SFC26086.1 | SAMN04489722_105272 | SAMN04489722_10279 | 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. | 2-oxoisovalerate dehydrogenase E1 component. | 0.694 |
SFD13687.1 | SFD14550.1 | SAMN04489722_105272 | SAMN04489722_105305 | 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. | Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. | 0.974 |
SFD13687.1 | SFD24497.1 | SAMN04489722_105272 | SAMN04489722_106193 | 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. | Homoserine O-acetyltransferase. | 0.584 |
SFD13687.1 | SFD52151.1 | SAMN04489722_105272 | SAMN04489722_11159 | 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. | Amino acid adenylation domain-containing protein. | 0.774 |
SFD13687.1 | SFD65944.1 | SAMN04489722_105272 | SAMN04489722_114110 | 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. | Branched-chain amino acid aminotransferase. | 0.933 |
SFD13687.1 | SFD67590.1 | SAMN04489722_105272 | SAMN04489722_1155 | 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. | Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component. | 0.694 |
SFD14550.1 | SFC25698.1 | SAMN04489722_105305 | SAMN04489722_10272 | Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. | Aspartate kinase. | 0.665 |
SFD14550.1 | SFD13687.1 | SAMN04489722_105305 | SAMN04489722_105272 | Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. | 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. | 0.974 |
page 1 of 4