STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD63915.12-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway). (204 aa)    
Predicted Functional Partners:
SFD67992.1
Fumarase, class II.
   
 0.740
SFC73486.1
Succinate dehydrogenase subunit A.
  
 
  0.722
SFD63895.1
CBS domain-containing protein.
  
    0.718
SFD63875.1
DNA polymerase-3 subunit epsilon.
       0.715
SFC73521.1
Succinate dehydrogenase / fumarate reductase iron-sulfur subunit.
  
 
  0.704
SFC73448.1
Succinate dehydrogenase / fumarate reductase cytochrome b subunit.
    
  0.698
SFC38772.1
FAD/FMN-containing dehydrogenase.
  
 
 0.630
SFC98768.1
Homogentisate 1,2-dioxygenase.
  
  
 0.538
Your Current Organism:
Algibacter lectus
NCBI taxonomy Id: 221126
Other names: A. lectus, Algibacter lectus Nedashkovskaya et al. 2004, Bacteroidetes bacterium KMM 3902, Bacteroidetes bacterium KMM 3914, DSM 15365, JCM 21761, KCTC 12103, KMM 3902
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