STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ68494.1Phycobilisome linker polypeptide; Belongs to the phycobilisome linker protein family. (303 aa)    
Predicted Functional Partners:
EAQ68493.1
Phycocyanin a subunit.
 
  
  0.914
EAQ68495.1
Phycocyanin beta subunit; COG0081 Ribosomal protein L1.
 
  
  0.903
EAQ68497.1
PBS lyase HEAT-like repeat protein; COG1413 FOG: HEAT repeat.
 
  
  0.901
EAQ68498.1
Phycocyanobilin lyase beta subunit; COG1413 FOG: HEAT repeat.
 
  
  0.901
EAQ68492.1
Phycocyanin beta subunit; COG0081 Ribosomal protein L1.
 
  
  0.896
EAQ68496.1
Phycocyanin a subunit.
 
  
  0.895
EAQ69800.1
Phycocyanin beta subunit; COG0081 Ribosomal protein L1.
  
  
  0.840
cpcT
Hypothetical protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
  
     0.774
EAQ68436.1
Linker polypeptide, allophycocyanin-associated; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.
  
     0.774
EAQ68438.1
Allophycocyanin alpha chain.
  
     0.774
Your Current Organism:
Synechococcus sp. RS9917
NCBI taxonomy Id: 221360
Other names: S. sp. RS9917
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