STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmdGDP-D-mannose 4, 6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose. (356 aa)    
Predicted Functional Partners:
EAQ70177.1
GDP-mannose pyrophosphorylase; COG0836 Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.949
cugP
Putative sugar-phosphate nucleotidyl transferase; Catalyzes the formation of UDP-glucose, from UTP and glucose 1-phosphate.
    
 0.905
EAQ68946.1
Thioredoxin; COG0526 Thiol-disulfide isomerase and thioredoxins; Belongs to the thioredoxin family.
    
   0.780
EAQ70141.1
Glycosyl transferase, group 1; COG0438 Glycosyltransferase.
  
 
 0.731
rplD
50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.
 
      0.715
EAQ70082.1
Putative dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
    
 0.698
EAQ68154.1
COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
  
  
 0.652
EAQ70119.1
COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
  
  
 0.652
EAQ70084.1
Putative nucleotide sugar epimerase/dehydratase; COG1086 Predicted nucleoside-diphosphate sugar epimerases.
  
  
 0.625
EAQ70108.1
Capsular polysaccharide biosynthesis protein; COG1086 Predicted nucleoside-diphosphate sugar epimerases.
  
  
 0.625
Your Current Organism:
Synechococcus sp. RS9917
NCBI taxonomy Id: 221360
Other names: S. sp. RS9917
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.