STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ69805.1Hypothetical protein; COG0607 Rhodanese-related sulfurtransferase. (175 aa)    
Predicted Functional Partners:
EAQ69806.1
Hypothetical protein; COG0730 Predicted permeases.
 
     0.847
EAQ69804.1
Beta-lactamase-like; COG0491 Zn-dependent hydrolases, including glyoxylases.
 
 0.832
ybeY
Hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
    
   0.812
rpsQ
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
   0.788
rplQ
COG0203 Ribosomal protein L17.
   
   0.763
EAQ70544.1
Probable O-succinylbenzoic acid--CoA ligase (OSB-CoA synthetase); COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
    
   0.760
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
   
   0.760
rplK
Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
   
   0.753
EAQ68777.1
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 
 0.751
EAQ68070.1
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 
 0.751
Your Current Organism:
Synechococcus sp. RS9917
NCBI taxonomy Id: 221360
Other names: S. sp. RS9917
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