STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gdhAGdhA protein; Glutamate dehydrogenase/leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (462 aa)    
Predicted Functional Partners:
tyrB
TyrB protein; Aspartate/aromatic aminotransferase.
   
 0.947
argB-2
ArgB protein; Acetylglutamate kinase; Belongs to the acetyltransferase family. ArgA subfamily.
  
 
 0.932
glnA
GlnA protein; Glutamine synthase.
  
 
 0.925
hcp
Unknown; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
     
 0.913
avtA-2
AvtA protein; PLP-dependent aminotransferases.
  
 
 0.912
icd
Icd protein; Isocitrate dehydrogenases.
   
 0.910
nrfA
NrfA protein; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family.
     
 0.904
rimI
RimI protein; Acetyltransferases.
     
  0.900
gltA
GltA protein; Citrate synthase; Belongs to the citrate synthase family.
   
 0.890
mdh
Mdh protein; Catalyzes the reversible oxidation of malate to oxaloacetate.
   
 
 0.859
Your Current Organism:
Mannheimia succiniciproducens
NCBI taxonomy Id: 221988
Other names: Mannheimia succiniciproducens MBEL55E, Mannheimia succiniciproducens str. MBEL55E, [. succiniciproducens MBEL55E, [Mannheimia] succiniciproducens MBEL55E
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