STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dctP-5DctP protein; Dicarboxylate-binding periplasmic protein. (328 aa)    
Predicted Functional Partners:
MS0697
Unknown.
 
  
 0.915
MS0696
Unknown; Integral membrane protein, possible transporter.
 
  
 0.903
MS0541
Unknown.
 
  
 0.815
MS0527
Unknown.
 
  
 0.795
MS0052
Unknown.
 
  
 0.793
MS0528
Unknown; Integral membrane protein, possible transporter.
 
  
 0.787
MS0540
Unknown; Integral membrane protein, possible transporter.
 
  
 0.787
MS0051
Unknown; Integral membrane protein, possible transporter.
 
  
 0.786
rpsO
RpsO protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
       0.409
Your Current Organism:
Mannheimia succiniciproducens
NCBI taxonomy Id: 221988
Other names: Mannheimia succiniciproducens MBEL55E, Mannheimia succiniciproducens str. MBEL55E, [. succiniciproducens MBEL55E, [Mannheimia] succiniciproducens MBEL55E
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.