STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trxBTrxB protein; Thioredoxin reductase. (318 aa)    
Predicted Functional Partners:
trxA-4
TrxA protein; Thiol-disulfide isomerase and thioredoxins; Belongs to the thioredoxin family.
 
 0.995
selD
SelD protein; Synthesizes selenophosphate from selenide and ATP.
     
 0.913
ahpC
AhpC protein; Peroxiredoxin.
  
 
 0.908
MS0952
Unknown; Thioredoxin domain-containing protein.
  
 
 0.901
lysA
LysA protein; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
  
 0.667
metG
MetG protein; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
 
 0.636
thiF
ThiF protein; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2.
  
  
 0.624
fdx-2
Fdx protein; Ferredoxin.
   
 
 0.616
baeS-3
BaeS protein; Sensory transduction histidine kinases.
 
  
 0.596
fdx
Fdx protein; Ferredoxin.
   
 
 0.595
Your Current Organism:
Mannheimia succiniciproducens
NCBI taxonomy Id: 221988
Other names: Mannheimia succiniciproducens MBEL55E, Mannheimia succiniciproducens str. MBEL55E, [. succiniciproducens MBEL55E, [Mannheimia] succiniciproducens MBEL55E
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.