Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MS0559 | MS1047 | MS0559 | MS1047 | Unknown. | Unknown. | 0.566 |
MS1047 | MS0559 | MS1047 | MS0559 | Unknown. | Unknown. | 0.566 |
MS1047 | MS1049 | MS1047 | MS1049 | Unknown. | Unknown. | 0.627 |
MS1047 | MS1068 | MS1047 | MS1068 | Unknown. | Unknown; Predicted Rossmann fold nucleotide-binding protein. | 0.655 |
MS1047 | dnaQ | MS1047 | MS0702 | Unknown. | DnaQ protein; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis. | 0.563 |
MS1047 | dsbG | MS1047 | MS1540 | Unknown. | DsbG protein; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. | 0.531 |
MS1047 | hflD | MS1047 | MS0298 | Unknown. | Unknown; Uncharacterized protein involved in purine metabolism. | 0.746 |
MS1047 | nfuA | MS1047 | MS2232 | Unknown. | Unknown; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. | 0.701 |
MS1047 | recF | MS1047 | MS0487 | Unknown. | RecF protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. | 0.530 |
MS1047 | rnd | MS1047 | MS1357 | Unknown. | Rnd protein; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.613 |
MS1047 | xthA | MS1047 | MS1048 | Unknown. | XthA protein; Exonuclease III. | 0.661 |
MS1049 | MS1047 | MS1049 | MS1047 | Unknown. | Unknown. | 0.627 |
MS1049 | xthA | MS1049 | MS1048 | Unknown. | XthA protein; Exonuclease III. | 0.757 |
MS1068 | MS1047 | MS1068 | MS1047 | Unknown; Predicted Rossmann fold nucleotide-binding protein. | Unknown. | 0.655 |
MS1068 | dsbG | MS1068 | MS1540 | Unknown; Predicted Rossmann fold nucleotide-binding protein. | DsbG protein; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. | 0.494 |
MS1068 | hflD | MS1068 | MS0298 | Unknown; Predicted Rossmann fold nucleotide-binding protein. | Unknown; Uncharacterized protein involved in purine metabolism. | 0.611 |
MS1068 | nfuA | MS1068 | MS2232 | Unknown; Predicted Rossmann fold nucleotide-binding protein. | Unknown; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. | 0.537 |
dnaQ | MS1047 | MS0702 | MS1047 | DnaQ protein; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis. | Unknown. | 0.563 |
dnaQ | dsbG | MS0702 | MS1540 | DnaQ protein; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis. | DsbG protein; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. | 0.570 |
dnaQ | hflD | MS0702 | MS0298 | DnaQ protein; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis. | Unknown; Uncharacterized protein involved in purine metabolism. | 0.693 |
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