STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cirA-4CirA protein; Outer membrane receptor proteins, mostly Fe transport. (715 aa)    
Predicted Functional Partners:
tonB
TonB protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.971
sbmA-2
SbmA protein; ABC-type long-chain fatty acid transport system, fused permease and ATPase components.
 
     0.696
cirA
CirA protein; Outer membrane receptor proteins, mostly Fe transport.
 
  
 0.540
fepC-3
FepC protein; ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components.
 
  
 0.512
cirA-3
CirA protein; Outer membrane receptor proteins, mostly Fe transport.
  
  
0.508
fecB-2
FecB protein; ABC-type Fe3+-siderophores transport systems, periplasmic components.
 
  
 0.474
norM
NorM protein; Multidrug efflux pump; Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family.
       0.452
MS2246
Unknown.
  
     0.425
Your Current Organism:
Mannheimia succiniciproducens
NCBI taxonomy Id: 221988
Other names: Mannheimia succiniciproducens MBEL55E, Mannheimia succiniciproducens str. MBEL55E, [. succiniciproducens MBEL55E, [Mannheimia] succiniciproducens MBEL55E
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