Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MS0312 | MS1757 | MS0312 | MS1757 | Unknown; Uncharacterized lipoprotein. | Unknown. | 0.774 |
MS0312 | hemY | MS0312 | MS0273 | Unknown; Uncharacterized lipoprotein. | HemY protein; Uncharacterized enzyme of heme biosynthesis. | 0.755 |
MS0312 | lolA | MS0312 | MS1452 | Unknown; Uncharacterized lipoprotein. | LolA protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.448 |
MS0312 | lolB | MS0312 | MS1534 | Unknown; Uncharacterized lipoprotein. | LolB protein; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein. | 0.702 |
MS0312 | nlpB | MS0312 | MS0267 | Unknown; Uncharacterized lipoprotein. | NlpB protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.771 |
MS0312 | oapA | MS0312 | MS0506 | Unknown; Uncharacterized lipoprotein. | OapA protein; Cell envelope opacity-associated protein A. | 0.773 |
MS0312 | ompA-3 | MS0312 | MS1220 | Unknown; Uncharacterized lipoprotein. | Outer membrane protein and related peptidoglycan-associated (lipo)proteins; Belongs to the outer membrane OOP (TC 1.B.6) superfamily. | 0.768 |
MS0312 | rseA | MS0312 | MS2229 | Unknown; Uncharacterized lipoprotein. | RseA protein; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the [...] | 0.761 |
MS1757 | MS0312 | MS1757 | MS0312 | Unknown. | Unknown; Uncharacterized lipoprotein. | 0.774 |
MS1757 | hemY | MS1757 | MS0273 | Unknown. | HemY protein; Uncharacterized enzyme of heme biosynthesis. | 0.731 |
MS1757 | lolB | MS1757 | MS1534 | Unknown. | LolB protein; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein. | 0.682 |
MS1757 | nlpB | MS1757 | MS0267 | Unknown. | NlpB protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.774 |
MS1757 | oapA | MS1757 | MS0506 | Unknown. | OapA protein; Cell envelope opacity-associated protein A. | 0.774 |
MS1757 | ompA-3 | MS1757 | MS1220 | Unknown. | Outer membrane protein and related peptidoglycan-associated (lipo)proteins; Belongs to the outer membrane OOP (TC 1.B.6) superfamily. | 0.746 |
MS1757 | rseA | MS1757 | MS2229 | Unknown. | RseA protein; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the [...] | 0.741 |
hemY | MS0312 | MS0273 | MS0312 | HemY protein; Uncharacterized enzyme of heme biosynthesis. | Unknown; Uncharacterized lipoprotein. | 0.755 |
hemY | MS1757 | MS0273 | MS1757 | HemY protein; Uncharacterized enzyme of heme biosynthesis. | Unknown. | 0.731 |
hemY | lolA | MS0273 | MS1452 | HemY protein; Uncharacterized enzyme of heme biosynthesis. | LolA protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.469 |
hemY | lolB | MS0273 | MS1534 | HemY protein; Uncharacterized enzyme of heme biosynthesis. | LolB protein; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein. | 0.740 |
hemY | nlpB | MS0273 | MS0267 | HemY protein; Uncharacterized enzyme of heme biosynthesis. | NlpB protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.721 |
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