Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MS2246 | cirA-4 | MS2246 | MS1315 | Unknown. | CirA protein; Outer membrane receptor proteins, mostly Fe transport. | 0.425 |
MS2246 | gumC | MS2246 | MS1486 | Unknown. | Uncharacterized protein involved in exopolysaccharide biosynthesis. | 0.461 |
MS2246 | miaB-2 | MS2246 | MS2247 | Unknown. | MiaB protein; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. | 0.640 |
MS2246 | pspE-3 | MS2246 | MS2248 | Unknown. | PspE protein; Rhodanese-related sulfurtransferases. | 0.479 |
cirA-4 | MS2246 | MS1315 | MS2246 | CirA protein; Outer membrane receptor proteins, mostly Fe transport. | Unknown. | 0.425 |
gumC | MS2246 | MS1486 | MS2246 | Uncharacterized protein involved in exopolysaccharide biosynthesis. | Unknown. | 0.461 |
miaB-2 | MS2246 | MS2247 | MS2246 | MiaB protein; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. | Unknown. | 0.640 |
miaB-2 | pspE-3 | MS2247 | MS2248 | MiaB protein; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. | PspE protein; Rhodanese-related sulfurtransferases. | 0.454 |
pspE-3 | MS2246 | MS2248 | MS2246 | PspE protein; Rhodanese-related sulfurtransferases. | Unknown. | 0.479 |
pspE-3 | miaB-2 | MS2248 | MS2247 | PspE protein; Rhodanese-related sulfurtransferases. | MiaB protein; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. | 0.454 |