STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000374165_00556Unannotated protein. (542 aa)    
Predicted Functional Partners:
GCA_000374165_00555
Unannotated protein.
 
    0.963
GCA_000374165_00557
Unannotated protein.
 
  
 0.884
GCA_000374165_00255
Unannotated protein.
 
    0.745
GCA_000374165_00332
Unannotated protein.
 
    0.744
GCA_000374165_04432
Unannotated protein.
 
    0.723
GCA_000374165_00560
Unannotated protein.
 
     0.474
GCA_000374165_03877
Unannotated protein.
  
     0.434
GCA_000374165_00509
Unannotated protein.
  
     0.409
Your Current Organism:
Frankia elaeagni
NCBI taxonomy Id: 222534
Other names: CECT 9031, DSM 46783, F. elaeagni, Frankia elaeagni Nouioui et al. 2016, Frankia sp. BMG5.12, strain BMG5.12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.