STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOS94407.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)    
Predicted Functional Partners:
AOS92246.2
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.619
AOS92402.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.469
linA
Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.455
snm_2
Type VII secretion integral membrane protein EccD; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.450
AOS90757.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.423
APD84234.1
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
   
    0.408
Your Current Organism:
Mycobacterium chimaera
NCBI taxonomy Id: 222805
Other names: CCUG 50989, CIP 107892, DSM 44623, JCM 14737, M. chimaera, Mycobacterium chimaera Tortoli et al. 2004, NCTC 13781, personal::FI-01069, strain FI-01069
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.