node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
NSE_0503 | rplC | NSE_0503 | NSE_0266 | Conserved hypothetical protein; Identified by similarity to SP:Q9A3C9; Belongs to the bacterial ribosomal protein bL31 family. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.999 |
NSE_0503 | rplQ | NSE_0503 | NSE_0290 | Conserved hypothetical protein; Identified by similarity to SP:Q9A3C9; Belongs to the bacterial ribosomal protein bL31 family. | Ribosomal protein L17; Identified by similarity to SP:P02416; match to protein family HMM PF01196; match to protein family HMM TIGR00059. | 0.999 |
NSE_0503 | rplT | NSE_0503 | NSE_0215 | Conserved hypothetical protein; Identified by similarity to SP:Q9A3C9; Belongs to the bacterial ribosomal protein bL31 family. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.999 |
NSE_0503 | rpmG | NSE_0503 | NSE_0257 | Conserved hypothetical protein; Identified by similarity to SP:Q9A3C9; Belongs to the bacterial ribosomal protein bL31 family. | Ribosomal protein L33; Identified by similarity to SP:P02436; match to protein family HMM PF00471; match to protein family HMM TIGR01023; Belongs to the bacterial ribosomal protein bL33 family. | 0.999 |
NSE_0503 | rpmI | NSE_0503 | NSE_0214 | Conserved hypothetical protein; Identified by similarity to SP:Q9A3C9; Belongs to the bacterial ribosomal protein bL31 family. | Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.999 |
NSE_0503 | rpsF | NSE_0503 | NSE_0062 | Conserved hypothetical protein; Identified by similarity to SP:Q9A3C9; Belongs to the bacterial ribosomal protein bL31 family. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
NSE_0503 | rpsM | NSE_0503 | NSE_0287 | Conserved hypothetical protein; Identified by similarity to SP:Q9A3C9; Belongs to the bacterial ribosomal protein bL31 family. | Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.999 |
NSE_0503 | rpsO | NSE_0503 | NSE_0058 | Conserved hypothetical protein; Identified by similarity to SP:Q9A3C9; Belongs to the bacterial ribosomal protein bL31 family. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.999 |
NSE_0503 | rpsP | NSE_0503 | NSE_0123 | Conserved hypothetical protein; Identified by similarity to SP:Q9A3C9; Belongs to the bacterial ribosomal protein bL31 family. | Ribosomal protein S16; Identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family. | 0.999 |
NSE_0503 | rpsR | NSE_0503 | NSE_0061 | Conserved hypothetical protein; Identified by similarity to SP:Q9A3C9; Belongs to the bacterial ribosomal protein bL31 family. | Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.999 |
rplC | NSE_0503 | NSE_0266 | NSE_0503 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Conserved hypothetical protein; Identified by similarity to SP:Q9A3C9; Belongs to the bacterial ribosomal protein bL31 family. | 0.999 |
rplC | rplQ | NSE_0266 | NSE_0290 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L17; Identified by similarity to SP:P02416; match to protein family HMM PF01196; match to protein family HMM TIGR00059. | 0.999 |
rplC | rplT | NSE_0266 | NSE_0215 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.999 |
rplC | rpmG | NSE_0266 | NSE_0257 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L33; Identified by similarity to SP:P02436; match to protein family HMM PF00471; match to protein family HMM TIGR01023; Belongs to the bacterial ribosomal protein bL33 family. | 0.999 |
rplC | rpmI | NSE_0266 | NSE_0214 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.999 |
rplC | rpsF | NSE_0266 | NSE_0062 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
rplC | rpsM | NSE_0266 | NSE_0287 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.999 |
rplC | rpsO | NSE_0266 | NSE_0058 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.999 |
rplC | rpsP | NSE_0266 | NSE_0123 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S16; Identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family. | 0.999 |
rplC | rpsR | NSE_0266 | NSE_0061 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.999 |